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| </tabber> | | </tabber> |
| <restricted>
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| == Useful Resources ==
| | {{#restricted:{{6.1 Correlation and Causation}}}}{{NavCard|prev=5.2 Scientific Optimism|next=6.2 Hill's Criteria}} |
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| <tabber>
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| |-|Lecture Video=
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| <br /><center><youtube>https://youtu.be/dQiHsFj3zwk</youtube></center><br />
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| |-|Discussion Slides=
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| {{LinkCard | |
| |url=https://docs.google.com/presentation/d/1iNu9Vph9h_7apn9jLPnzrIgtOQs6sSlVTVMnN2lSNE0/
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| |title=Discussion Slides Template
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| |description=The discussion slides for this lesson.
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| }}
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| <br />
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| |-|Handouts and Activities=
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| {{LinkCardInternal
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| |url=:File:Van der Horst et al. - 2015 - Nordic Hamstring Exercise.pdf
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| |title=The Preventative Effect of the Nordic Hamstring Exercise on Hamstring Injuries in Amateur Soccer Players
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| |description=The paper the students analyze in the first part of the paper analysis activity.}}
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| {{LinkCard
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| |url=https://github.com/sensesensibilityscience/datascience/blob/master/truffula.ipynb
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| |title=Truffula Jupyter Notebook
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| |description=Data science notebook where students perform their own RCTs.}}
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| {{LinkCard
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| |url=https://datahub.berkeley.edu/hub/user-redirect/git-pull?repo=https://github.com/sensesensibilityscience/datascience&urlpath=tree/datascience/truffula.ipynb&branch=master
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| |title=Truffula Jupyter Notebook (Datahub Link)
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| |description='''Special link for use at UC Berkeley only.''' Data science notebook where students perform their own RCTs.}}
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| <br />
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| |-|Readings and Assignments=
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| {{LinkCard
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| |url=https://www.youtube.com/watch?v=HUti6vGctQM
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| |title=Correlation CAN Imply Causation!
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| |description=Short MinutePhysics video on the relationship between correlation and causation.
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| }}
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| <br />
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| </tabber>
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| == Recommended Outline ==
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| === Before Class ===
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| Make sure you review the Jupyter Notebook and look through the Nordic Hamstring Exercise paper.
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| === During Class ===
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| {| class="wikitable" style="margin-left: 0px; margin-right: auto;"
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| |5 Minutes
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| |Introduce the lesson and go over the plan for the day. Make sure people have groups, spokespeople, etc.
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| |-
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| |5 Minutes
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| |Go over the [[#Warm-up Question|warm-up question]] and very quickly remind the students of the concepts from lecture.
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| |-
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| |35 Minutes
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| |Have the students work through the [[#Paper Analysis (Part 1)|paper analysis activity]] in small groups.
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| |-
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| |30 Minutes
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| |Have the students work through [[#Jupyter Notebook|Truffula Jupyter Notebook]] in pairs.
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| |}
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| == Lesson Content ==
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| === Warm-up Question ===
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| Suppose there's an epidemic of Lyn's disease and a new drug is proposed as a treatment. 10,000 patients with the disease are given the drug, and 8,700 of them recover. Does this result:
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| <ol style="list-style-type:lower-alpha">
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| <li>{{Correct|Give no info about the presence or absence of a causal link.}}</li>
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| <li>Establish that the treatment makes no difference.</li>
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| <li>Tentatively confirm the efficacy of the treatment, though more evidence may be needed.</li>
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| <li>Demonstrate conclusively the existence of an effect.</li>
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| </ol>
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| {{BoxAnswer|title=Explanation|There's no control group.}} | |
| === Paper Analysis (Part 1) ===
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| Students will read the abstract or skim through the text of three different scientific papers (one today and two in [[6.2 Hill's Criteria]]) and comment on the extent to which they follow the structure of an RCT. For students who are unfamiliar with scientific papers, this will be an opportunity to demystify them.
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| {{BoxCaution|Remind students that they do not need to understand every word or phrase in the abstract, and certainly not in the main text. They only need to extract the important information about the question under study, the design, and results, and the interpretation.}}
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| {{LinkCardInternal
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| |url=:File:Van der Horst et al. - 2015 - Nordic Hamstring Exercise.pdf
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| |title=The Preventative Effect of the Nordic Hamstring Exercise on Hamstring Injuries in Amateur Soccer Players
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| |description=The paper the students analyze in the first part of the paper analysis activity.}}
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| ====Instructions ====
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| {| class="wikitable" style="margin-left: 0px; margin-right: auto;"
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| |5 Minutes
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| |Explain the activity and give the students some tips on how to read scientific papers.
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| |-
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| |20 Minutes
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| |Have the class review the Nordic Hamstrings Exercise paper in small groups.
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| |-
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| |10 Minutes
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| |Have the class share their thoughts on the paper.
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| |}
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| {{BoxTip|title=How to Effectively Skim Papers|
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| # Read the abstract
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| # Skim the introduction
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| # Look at the figures
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| # Read at least the first few paragraphs of the conclusion}}
| |
| ==== Discussion Questions ====
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| The students should try to answer the following.
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| <ol start=1><li>What causal relationship is this paper trying to study? What is the hypothesis?</li></ol>
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| {{BoxAnswer|Whether players do the NHE.}}
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| <ol start=2><li>What, if it exists at all, is the experimental intervention? (i.e., What is the independent variable that is being manipulated)?</li></ol>
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| {{BoxAnswer|Whether players do the NHE.}}
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| <ol start=3><li>What is the dependent variable that is being measured (i.e., the variable the researchers anticipate may be affected by the experimental intervention)?</li></ol>
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| {{BoxAnswer|The number of hamstring injuries (and their severity).}}
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| <ol start=4><li>How is the independent variable manipulated? Are there control and intervention groups? Are those randomly assigned? Is the control condition a good one (only the independent variable is different, with all else kept equal)? Is this an RCT?</li></ol>
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| {{BoxAnswer|Players are randomly assigned to two groups. The intervention group is asked to do NHE, while the control group is not. This is a good control, as all other variables are kept equal. This is an RCT.}}
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| <ol start=5><li>What is the result of the experiment?</li></ol>
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| {{BoxAnswer|Experimenters found a significant reduction in hamstring injuries in the intervention group. They did not find a significant difference in injury severity between the two groups.}}
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| <ol start=6><li>Can the causal relationship in question 1 be concluded from the experimental results? If not, what, if anything, can be concluded? How confident are you in this conclusion?</li></ol>
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| {{BoxAnswer|Yes, there is a causal relationship as demonstrated by this study. There is no causal relationship between NHE and injury severity.}}
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| <ol start=7><li>Can you think of an alternative explanation for the data?</li></ol>
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| {{BoxAnswer|It ''could'' just be noise, since the sample isn't that big, but the difference is big enough that seems unlikely. Since it's an RCT, it's designed to minimize the chances of a confound, and it's hard to think of a very likely alternative explanation.}}
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| {{BoxCaution|One complication is that the reduction in injuries may be due to the belief that NHE works (placebo effect), or because of any sort of consistent pre-game exercise, rather than NHE itself.}}
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| === Jupyter Notebook ===
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| This activity is intended to give the students the experience of performing their own RCT.
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| {{BoxCaution|We recommend pairing students, ideally one more and one less familiar with Jupyter notebooks. The notebook is self-contained, and the instructor should offer timely assistance and possibly demonstrate on their own computer wherever necessary.}}
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| {{LinkCard
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| |url=https://github.com/sensesensibilityscience/datascience/blob/master/truffula.ipynb
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| |title=Truffula Jupyter Notebook
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| |description=Data science notebook where students perform their own RCTs.}}
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| {{LinkCard
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| |url=https://datahub.berkeley.edu/hub/user-redirect/git-pull?repo=https://github.com/sensesensibilityscience/datascience&urlpath=tree/datascience/truffula.ipynb&branch=master
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| |title=Truffula Jupyter Notebook (Datahub Link)
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| |description='''Special link for use at UC Berkeley only.''' Data science notebook where students perform their own RCTs.}}
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| ==== Instructions ====
| |
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| {| class="wikitable" style="margin-left: 0px; margin-right: auto;"
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| |20 Minutes
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| |The class works through the Jupyter notebook
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| |-
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| |10 Minutes
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| |Go over the post-notebook discussion questions.
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| |}
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| ==== Truffula Notebook Video Demo ====
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| <!-- Styling here is a little weird. We're centering it like this because the <youtube> tag doesn't seem to play well with non-global css styling. This applies when styling directly, when doing it through a template, and through importing a styles.css template. See Template:VideoFrame and Template:VideoFrame/styles.css for examples of things that failed. -->
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| <!-- The center isn't exactly centered and I don't know why. Oof. ☹️ -->
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| <!-- <center style="margin-left: 1.6rem; margin-right: 1.6rem; padding: 0;">
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| <youtube>8LIltFXAh7k</youtube>
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| </center> -->
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| <center><youtube>8LIltFXAh7k</youtube></center>
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| ==== Discussion Questions ====
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| <ol start=1><li>"If the experimenter is merely observing and measuring, without actively performing an intervention themself, then it is not an RCT." Is this a correct statement?</li></ol>
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| {{BoxAnswer|No. While an intervention is necessary for an RCT, it doesn't have to be performed by the experimenter themself. It may be performed by some environmental factor that is effectively random and that averages over all other causal factors. See the Vietnam War draft study for example.}} {{BoxCaution|This is called a natural experiment, which is very common in the study of humans and ecosystems, which are difficult or impossible to directly intervene on.}}
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| <ol start=2><li>Psychological studies often recruit subjects from university undergraduates. This means that their sampling is not random. How is random sampling different from randomized assignment? How does the sampling method affect the validity or conclusion of a study?</li></ol>
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| {{BoxAnswer|Random sampling is the random selection of individuals from a population. Randomized assignment is the process of placing individuals into either the intervention or the control group in a random way, paying no regard to any quality, ''after'' the sample of individuals has already been selected from a population. The sampling method affects how representative the sample is and how generalizable the experimental conclusion is to the whole population. It may affect the validity of a study depending on how their authors state their conclusion.}}
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| {{BoxCaution|title=Misconception|{{Misconception|If the samples are not randomly chosen from the population, then it is not an RCT.|Random sampling is not necessary for an RCT. It only affects the generalizability of the results of an RCT.|first=yes}}}}<!-- == Overflow ==
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| <hr class="solid">
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| <div class="toccolours mw-collapsible mw-collapsed" style="overflow:auto;">
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| <div style="font-weight:bold;line-height:1.6;">Extra content that's not currently part of the official lesson plan.</div>
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| <div class="mw-collapsible-content">
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| === Changemaker ===
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| # {{Changemaker|In the Fireside Chat with Professor O'Reilly, what did his research point to as the reason why shoelaces come untied? What steps did he take to establish causation instead of correlation? }}
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| # {{Changemaker|Consider the following passage from the Scientific American article "How Diversity Makes Us Smarter", }} [https://www.scientificamerican.com/article/how-diversity-makes-us-smarter/] <blockquote>"{{Changemaker|For this reason, diversity appears to lead to higher-quality scientific research. In 2014 Richard Freeman, an economics professor at Harvard University and director of the Science and Engineering Workforce Project at the National Bureau of Economic Research, along with Wei Huang, a Harvard economics Ph.D. candidate, examined the ethnic identity of the authors of 1.5 million scientific papers written between 1985 and 2008 using Thomson Reuters's Web of Science, a comprehensive database of published research. They found that papers written by ethnically diverse groups receive more citations and have higher impact factors than papers written by people from the same ethnic group. Moreover, they found that stronger papers were associated with a greater number of author addresses; geographical diversity, and a larger number of references, is a reflection of more intellectual diversity.}}"</blockquote>{{Changemaker|The authors claim that intellectual diversity is a driving factor of higher quality scientific research. Considering what you have learned about causation and correlation, what are some other possible factors that could contribute to this observed effect? }}
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| # {{Changemaker|Cognitive flexibility is broadly defined as "the ability to use different thinking strategies and mental frameworks". While this is applicable to many SSS concepts, in what way does cognitive flexibility assist in assessing statements about causation and correlation?}}
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| </div></div>
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| <hr class="solid"> --></restricted>{{NavCard|prev=5.2 Scientific Optimism|next=6.2 Hill's Criteria}}
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| [[Category:Lesson plans]] | | [[Category:Lesson plans]] |